Add a peak set to an ArchRProject — addPeakSet • ArchR

This function adds a peak set as a GRanges object to a given ArchRProject.

addPeakSet(
  ArchRProj = NULL,
  peakSet = NULL,
  genomeAnnotation = getGenomeAnnotation(ArchRProj),
  force = FALSE
)

Arguments

ArchRProj	An `ArchRProject` object.
peakSet	A `GRanges` object containing the set of regions that define all peaks in the desired peak set.
genomeAnnotation	The genomeAnnotation (see `createGenomeAnnotation()`) to be used for generating peak metadata such as nucleotide information (GC content) or chromosome sizes.
force	If a `peakSet` object has already been added to the given `ArchRProject`, the value of `force` determines whether or not to overwrite this `peakSet`.