subsetArchRProject.Rd
This function will subset and ArchRProject by cells and save the output to a new directory and re-load the subsetted ArchRProject.
subsetArchRProject( ArchRProj = NULL, cells = getCellNames(ArchRProj), outputDirectory = "ArchRSubset", dropCells = TRUE, logFile = NULL, threads = getArchRThreads(), force = FALSE )
ArchRProj | An |
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cells | A vector of cells to subset |
outputDirectory | A directory path to save all ArchR output and the subsetted |
dropCells | A boolean indicating whether to drop cells that are not in |
logFile | The path to a file to be used for logging ArchR output. |
threads | The number of threads to use for parallel execution. |
force | If output directory exists overwrite. |