This function will organize arrows and project output into a directory and save the ArchRProject for later usage.
saveArchRProject( ArchRProj = NULL, outputDirectory = getOutputDirectory(ArchRProj), overwrite = TRUE, load = TRUE, dropCells = FALSE, logFile = createLogFile("saveArchRProject"), threads = getArchRThreads() )
A directory path to save all ArchR output and
When writing to outputDirectory, overwrite existing files with new files.
A boolean indicating whether to drop cells that are not in
The path to a file to be used for logging ArchR output.
The number of threads to use for parallel execution.