projectBulkATAC.Rd
This function will Project Bulk ATAC-seq data into single cell subspace.
projectBulkATAC( ArchRProj = NULL, seATAC = NULL, reducedDims = "IterativeLSI", embedding = "UMAP", n = 250, verbose = TRUE, threads = getArchRThreads(), logFile = createLogFile("projectBulkATAC") )
ArchRProj | An |
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seATAC | Bulk ATAC Summarized Experiment. |
reducedDims | A string specifying the reducedDims. |
embedding | A string specifying embedding. |
n | An integer specifying the number of subsampled "pseudo single cells" per bulk sample. |
verbose | A boolean value indicating whether to use verbose output during execution of this function. Can be set to FALSE for a cleaner output. |
threads | The number of threads used for parallel execution |
logFile | The path to a file to be used for logging ArchR output. |