plotFragmentSizes.Rd
This function will plot a fragment size distribution for each sample. Only cells in the ArchRProject
are used when making this plot.
plotFragmentSizes( ArchRProj = NULL, groupBy = "Sample", chromSizes = getChromSizes(ArchRProj), maxSize = 750, pal = NULL, returnDF = FALSE, threads = getArchRThreads(), logFile = createLogFile("plotFragmentSizes") )
ArchRProj | An |
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groupBy | The name of the column in |
chromSizes | A GRanges object of the chromosome lengths. See |
maxSize | The maximum fragment size (in basepairs) to be included when plotting the fragment size distribution. |
pal | A color palette representing the groups from groupBy in fragment size plot. |
returnDF | A boolean value that indicates whether to return a |
threads | An integer specifying the number of threads to use for calculation. By default this uses the number of threads set by |
logFile | The path to a file to be used for logging ArchR output. |