This function will perform hypergeometric enrichment of a given peak annotation within the defined marker peaks.
peakAnnoEnrichment( seMarker = NULL, ArchRProj = NULL, peakAnnotation = NULL, matches = NULL, cutOff = "FDR <= 0.1 & Log2FC >= 0.5", background = "all", logFile = createLogFile("peakAnnoEnrichment") )
A valid-syntax logical statement that defines which marker features from
A string that indicates whether to use a background set of matched peaks to compare against ("bgdPeaks") or all peaks ("all").
The path to a file to be used for logging ArchR output.