ggOneToOne.Rd
This function is a wrapper around ggplot geom_point to allow for plotting one-to-one sample comparisons in ArchR.
ggOneToOne( x = NULL, y = NULL, size = 2, alpha = 1, xlabel = "x", ylabel = "y", title = "Correlation", min = 0.05, max = 0.9999, nPlot = 100 * 10^3, nKernel = 100, densityMax = 0.95, extend = 0.05, baseSize = 6, rastr = TRUE, pal = paletteContinuous(set = "blueYellow"), ... )
x | A numeric vector containing the x-axis values for each point. |
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y | A numeric vector containing the y-axis values for each point. |
size | The numeric size of the points to plot. |
alpha | A number indicating the transparency to use for each point. See |
xlabel | The label to plot for the x-axis. |
ylabel | The label to plot for the y-axis. |
title | The title of the plot. |
min | The lower limit of the x and y axes as a numeric quantile between 0 and 1. |
max | The upper limit of the x and y axes as a numeric quantile between 0 and 1. |
nPlot | The number of points to plot. When this value is less than the total points, the |
nKernel | The number of grid points in each direction to use when computing the kernel with |
densityMax | The quantile that should be represented by the maximum color on the continuous scale designated by |
extend | A numeric value indicating the fraction to extend the x-axis and y-axis beyond the maximum value on either axis. For example, 0.05 will extend the x-axis and y-axis by 5 percent on each end beyond |
baseSize | The base font size (in points) to use in the plot. |
rastr | A boolean value that indicates whether the plot should be rasterized. This does not rasterize lines and labels, just the internal portions of the plot. |
pal | A custom palette from |
... | Additional params to be supplied to ggPoint |