getMatrixFromProject.Rd
This function gets a given data matrix from an ArchRProject
.
getMatrixFromProject( ArchRProj = NULL, useMatrix = "GeneScoreMatrix", useSeqnames = NULL, verbose = TRUE, binarize = FALSE, threads = getArchRThreads(), logFile = createLogFile("getMatrixFromProject") )
ArchRProj | An |
---|---|
useMatrix | The name of the data matrix to retrieve from the given ArrowFile. Options include "TileMatrix", "GeneScoreMatrix", etc. |
useSeqnames | A character vector of chromosome names to be used to subset the data matrix being obtained. |
verbose | A boolean value indicating whether to use verbose output during execution of this function. Can be set to FALSE for a cleaner output. |
binarize | A boolean value indicating whether the matrix should be binarized before return. This is often desired when working with insertion counts. |
logFile | The path to a file to be used for logging ArchR output. |