Export Group Summarized Experiment

This function will group, summarize and export a summarized experiment for a assay in a ArchRProject.

getGroupSE(
  ArchRProj = NULL,
  useMatrix = NULL,
  groupBy = "Sample",
  divideN = TRUE,
  scaleTo = NULL,
  threads = getArchRThreads(),
  verbose = TRUE,
  logFile = createLogFile("getGroupSE")
)

Arguments

ArchRProj	An ArchRProject object.
useMatrix	The name of the matrix in the ArrowFiles. See getAvailableMatrices to see options
groupBy	The name of the column in cellColData to use for grouping cells together for summarizing.
divideN	A boolean describing whether to divide by the number of cells.
scaleTo	Depth normalize to this value if not NULL.
threads	An integer specifying the number of threads for parallel.
verbose	A boolean specifying to print messages during computation.
logFile	The path to a file to be used for logging ArchR output.