This function retrieves the fragments from a given ArchRProject as a GRangesList object.
getFragmentsFromProject( ArchRProj = NULL, subsetBy = NULL, cellNames = NULL, verbose = FALSE, logFile = createLogFile("getFragmentsFromProject") )
A Genomic Ranges object to subset fragments by.
A character vector indicating the cell names of a subset of cells from which fragments whould be extracted.
This allows for extraction of fragments from only a subset of selected cells. By default, this function will extract all cells
from the provided ArrowFile using
A boolean value indicating whether to use verbose output during execution of this function. Can be set to
The path to a file to be used for logging ArchR output.