This function will get/compute background peaks controlling for total accessibility and GC-content from an ArchRProject.
getBgdPeaks( ArchRProj = NULL, nIterations = 50, w = 0.1, binSize = 50, seed = 1, method = "chromVAR", force = FALSE )
The number of background peaks to sample. See
The parameter controlling similarity measure of background peaks. See
The precision with which the similarity is computed. See
A number to be used as the seed for random number generation. It is recommended to keep track of the seed used so that you can reproduce results downstream.
A string indicating whether to use chromVAR or ArchR for background peak identification.
A boolean value indicating whether to force the file indicated by