filterChrGR.Rd
This function allows for removal of manually designated or more broadly undesirable seqlevels from a Genomic Ranges object or similar object
filterChrGR( gr = NULL, remove = NULL, underscore = TRUE, standard = TRUE, pruningMode = "coarse" )
gr | A |
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remove | A character vector indicating the seqlevels that should be removed if manual removal is desired for certain seqlevels.
If no manual removal is desired, |
underscore | A boolean value indicating whether to remove all seqlevels whose names contain an underscore (for example "chr11_KI270721v1_random"). |
standard | A boolean value indicating whether only standard chromosomes should be kept. Standard chromosomes are defined by
|
pruningMode | The name of the pruning method to use (from |