addTileMatrix.Rd
This function, for each sample, will independently compute counts for each tile per cell in the ArrowFile
addTileMatrix( input = NULL, chromSizes = if (inherits(input, "ArchRProject")) getChromSizes(input) else NULL, blacklist = if (inherits(input, "ArchRProject")) getBlacklist(input) else NULL, tileSize = 500, binarize = TRUE, excludeChr = c("chrM", "chrY"), threads = getArchRThreads(), parallelParam = NULL, force = FALSE, logFile = createLogFile("addTileMatrix") )
input | An |
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chromSizes | A named numeric vector containing the chromsome names and lengths. The default behavior is to retrieve
this from the |
blacklist | A |
tileSize | The size of the tiles used for binning counts in the "TileMatrix". |
binarize | A boolean value indicating whether the "TileMatrix" should be binarized prior to storage. |
excludeChr | A character vector containing the |
threads | The number of threads to be used for parallel computing. |
parallelParam | A list of parameters to be passed for biocparallel/batchtools parallel computing. |
force | A boolean value indicating whether to force the "TileMatrix' to be overwritten if it already exist in the given |
logFile | The path to a file to be used for logging ArchR output. |