This function for each sample will independently compute counts for each feature per cell in the provided ArchRProject or set of ArrowFiles.
addFeatureMatrix( input = NULL, features = NULL, matrixName = "FeatureMatrix", ceiling = 10^9, binarize = FALSE, verbose = TRUE, threads = getArchRThreads(), parallelParam = NULL, force = TRUE, logFile = createLogFile("addFeatureMatrix") )
The name to be used for storage of the feature matrix in the provided
The maximum counts per feature allowed. This is used to prevent large biases in feature counts.
A boolean value indicating whether the feature matrix should be binarized prior to storage. This can be useful for downstream analyses when working with insertion counts.
A boolean value that determines whether standard output includes verbose sections.
The number of threads to be used for parallel computing.
A list of parameters to be passed for biocparallel/batchtools parallel computing.
A boolean value indicating whether to force the matrix indicated by
The path to a file to be used for logging ArchR output.