This function will add total counts of scATAC cells in provided features into ArchRProject.

This function will add total counts of scATAC cells in provided features into ArchRProject.

addFeatureCounts(
  ArchRProj = NULL,
  features = NULL,
  name = NULL,
  addRatio = TRUE,
  threads = getArchRThreads(),
  logFile = createLogFile("addFeatureCounts")
)

Arguments

ArchRProj	An ArchRProject object.
features	A GRanges object of features to count scATAC-seq data in.
name	A character defining the name of the features. "nameCounts" and "nameRatio" will be added to the ArchRProject.
addRatio	A boolean indicating whether to add the "nameRatio" to the ArchRProject.
threads	The number of threads to use for parallel execution.
logFile	The path to a file to be used for logging ArchR output.